KEGG pathway map 怎么存成一个adjacency matrix 或 graph object? - Biology版 - 未名存档

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Biology版 - KEGG pathway map 怎么存成一个adjacency matrix 或 graph object?

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相关话题的讨论汇总
话题: kegg话题: adjacency话题: matrix话题: object话题: 存成

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g*******g 发帖数: 45	1 RT. KEGG网站上搜到的网络结构图怎么样下载成matrix格式，或者一个类似igraph object能在R里面进行分析和处理的数据？
N******n 发帖数: 3003	2 自己要把原始的文件下来，有1对1的关系，然后做成matrix
p***g 发帖数: 66	3 Some packages in R/Bioconductor do this type of work or even more: http://pathview.r-forge.r-project.org/ http://bioconductor.org/packages/2.13/bioc/html/pathview.html http://bioconductor.org/packages/2.13/bioc/html/KEGGgraph.html
N******n 发帖数: 3003	4 这个现在不能得到KEGG的dataset，要钱买。【在 p***g 的大作中提到】 : Some packages in R/Bioconductor do this type of work or even more: : http://pathview.r-forge.r-project.org/ : http://bioconductor.org/packages/2.13/bioc/html/pathview.html : http://bioconductor.org/packages/2.13/bioc/html/KEGGgraph.html
p***g 发帖数: 66	5 KEGG did shut down their ftp access for bulk download. But users are still able to access data through Rest API: http://www.kegg.jp/kegg/rest/. You don’t really need to download anything by youself. The program does that.
p***g 发帖数: 66	6 You don’t really need to download anything by yourself. The program does that.

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● 软件商业化	● Signal pathway制作
● KEGG的ftp开始收费了	● Do someone know how to use PAVE (program for assembling and viewing EST)? help me.
● 怎样从KEGG上download所以最新的pathway,txt file	● A Bioinformatic question
● 基因data mining很茫然啊	● 刚发现kegg收费了啊

相关话题的讨论汇总
话题: kegg话题: adjacency话题: matrix话题: object话题: 存成

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