r****q
发帖数: 22 | 1 如果你做gene-set or pathway analysis, 可以试一下GAGE method. Package may be
installed through Bioconductor or by itself. The package is available at:
http://bioconductor.org/help/bioc-views/release/bioc/html/gage.html
GAGE method has been published at:
http://www.biomedcentral.com/1471-2105/10/161 |
h***i
发帖数: 3844 | 2 用过 ，一般
be
【在 r****q 的大作中提到】
: 如果你做gene-set or pathway analysis, 可以试一下GAGE method. Package may be
: installed through Bioconductor or by itself. The package is available at:
: http://bioconductor.org/help/bioc-views/release/bioc/html/gage.html
: GAGE method has been published at:
: http://www.biomedcentral.com/1471-2105/10/161
|
r****q
发帖数: 22 | 3 好快呀.
给一点详细的意见和建议? 对author 和 user 都有好处的说.
【在 h***i 的大作中提到】
: 用过 ，一般
:
: be
|
r****q
发帖数: 22 | 4 Forgot to mention, this gage package requires packages ‘graph’ and ‘
multtest’to be installed too. But you may install all of them individually
without Bioconductor. |
h***i
发帖数: 3844 | 5 stanford那帮人搞得那个package 也可以用。用在real data上得到的结果都很normal，
不出彩。
【在 r****q 的大作中提到】
: 好快呀.
: 给一点详细的意见和建议? 对author 和 user 都有好处的说.
|
p**n
发帖数: 1437 | 6 恩，lz自己写的，然后到这里来推荐一下让大家都用用，然后发paper的时候别忘了引
用一下lz的paper，帮lz涨涨citation
具体好用不要用我不知道…… |
r****q
发帖数: 22 | 7 We haven’t compared GAGE to the Stanford method. Users are welcome to try
both out and do the comparison by themselves. But we did compare it to two
most frequently used methods in the paper. We got consistently better
results in three aspects: consistency, sensitivity/selectivity, and
biological relevance.
One major advantage of GAGE is that it is generally applicable independent
of sample sizes, experimental designs, microarray platforms, and other types
of heterogeneity, in the mean time, achieving consistent performance.
normal，
【在 h***i 的大作中提到】
: stanford那帮人搞得那个package 也可以用。用在real data上得到的结果都很normal，
: 不出彩。
|
h***i
发帖数: 3844 | 8 你是做这个的是吧，那我就不评价了。呵呵。
types
【在 r****q 的大作中提到】
: We haven’t compared GAGE to the Stanford method. Users are welcome to try
: both out and do the comparison by themselves. But we did compare it to two
: most frequently used methods in the paper. We got consistently better
: results in three aspects: consistency, sensitivity/selectivity, and
: biological relevance.
: One major advantage of GAGE is that it is generally applicable independent
: of sample sizes, experimental designs, microarray platforms, and other types
: of heterogeneity, in the mean time, achieving consistent performance.
:
: normal，
|
r****q
发帖数: 22 | 9
你得到了它. 希望不算太WS.
好不好用, 一试便知..
【在 p**n 的大作中提到】
: 恩，lz自己写的，然后到这里来推荐一下让大家都用用，然后发paper的时候别忘了引
: 用一下lz的paper，帮lz涨涨citation
: 具体好用不要用我不知道……
|
