G***G
发帖数: 16778 | 1 I am looking for a online tool or free tool which
can be used to peptide identification from mzxml file.
it would be better if it can output not only peptide sequence
but also peptide intensity.
or protein id and protein intensity. |
s****a
发帖数: 1039 | 2 search massmatrix for online search
or use OMSSA
and download and install and learn to use
TPP
refer to http://groups.google.com/group/spctools-discuss?hl=en&pli=1
【在 G***G 的大作中提到】
: I am looking for a online tool or free tool which
: can be used to peptide identification from mzxml file.
: it would be better if it can output not only peptide sequence
: but also peptide intensity.
: or protein id and protein intensity.
|
l****y
发帖数: 398 | 3 google "X!tandem"
【在 G***G 的大作中提到】
: I am looking for a online tool or free tool which
: can be used to peptide identification from mzxml file.
: it would be better if it can output not only peptide sequence
: but also peptide intensity.
: or protein id and protein intensity.
|
G***G
发帖数: 16778 | 4 thanks. I used OMSSA before. did you use it?
do you know how to get peptide quantition from OMSSA?
is it easy to get peptide/protein quantition from x!tandem?
【在 l****y 的大作中提到】
: google "X!tandem"
|
G***G
发帖数: 16778 | 5 I am using OMSSA now.
which output parameter is the peptide intensity or protein intensity?
【在 s****a 的大作中提到】
: search massmatrix for online search
: or use OMSSA
: and download and install and learn to use
: TPP
: refer to http://groups.google.com/group/spctools-discuss?hl=en&pli=1
|
s****a
发帖数: 1039 | 6 do u want to do peptide quantitation?
use X!Tandem or OMSSA first and use the quantitation function of TPP. You
shall get the intensity information.
【在 G***G 的大作中提到】
: I am using OMSSA now.
: which output parameter is the peptide intensity or protein intensity?
|
G***G
发帖数: 16778 | 7 got it. thanks a lot.
【在 s****a 的大作中提到】
: do u want to do peptide quantitation?
: use X!Tandem or OMSSA first and use the quantitation function of TPP. You
: shall get the intensity information.
|
