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T***B
发帖数: 137 | 2 I wrote a script which would run some commands within the control of another
program/software.
the script is like:
rasmol 1ggx.pdb <
centre 202A
quit
eof
rasmol is a software which can display 3-D structure of proteins. The excution
of the above script would be like:
[mi@tin myProgram]$ rasmol 1ggx.pdb
RasMol> centre 202A
RasMol> quit
[mi@tin myProgram]$
What I want to do is to write a piece of C or C++ code doing the same thing.
Any any Da Xia help? Thanks! |
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t******g
发帖数: 10390 | 4 不会是蛋白结构的文件吧。
你可以去www.bio-soft.net里当3D软件试试。
rasmol最简单，
还有一个molmol好像是IE或者NS的插件。 |
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f**********e
发帖数: 1994 | 6 use rasmol
open molecule
(in console)
select 103-107 (if the segment is AA 103-107)
color red
then you can see the segment colored in red, then you can tell |
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p****p
发帖数: 3360 | 7 There is some problem with the links.
Right click. Choose "copy link location". Paste the link to an open notepad.
The 4 letter code after "http://scop.mrc-lmb.cam.ac.uk/scop/rsgen.cgi?pd=" is your structure ID.
Go to pdb.org and get your structure. |
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f**********e
发帖数: 1994 | 9 psipred 是目前较好的预测法
dssp 在 rasmol 有内建 |
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f**********e
发帖数: 1994 | 10 用 rasmol 打开，用 restrict 指令选 chain id
protein |
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w***c
发帖数: 116 | 11 搞定了，我用的版本，RasMol V2.4，用restrict :F就是选中F chain。 |
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f*****f
发帖数: 195 | 12 比如说restrict :A后要单独看chain B，命令行是怎么输入？
怎样回到初始状态？假如直接输入restrict :B就一条链都不显示了。谢谢 |
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l******g
发帖数: 163 | 13 Rasmol ==> free and easy to use
VMD ==> could generate very high quality images with povray |
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p**h
发帖数: 99 | 15 not sure your meaning.
if you want to view a molecule structure, you may use rasmol, which can
also export the picture to your word. |
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