j*k 发帖数: 86 | 1 嗯。编程一定要苦练过关。
另外,因为我上过很多数学课,
请问Scientific Computing方向,开的课有Scientific Computing,Numerical
Analysis,
Numerical Solution of Nonlinear Equations,Advanced Numerical Optimization等
等,如果只修课(硕士),出来可以做什么样的工作啊? |
|
l******a 发帖数: 3803 | 2
LOL. Guess only explanation is
their eyes exhibit nonlinear discrimination towards selected targets. |
|
E*V 发帖数: 17544 | 3 ☆─────────────────────────────────────☆
buddyboy (hello) 于 (Tue Sep 30 01:15:22 2008) 提到:
google notebook有几点不爽:
1。不能分层,最多两层。不便于分类管理
2。不能方便的导出,只能村为google doc
3。总是频繁save,经常把光标搞没了
还有没有方便的web2.0笔记本了?
☆─────────────────────────────────────☆
buddyboy (hello) 于 (Tue Sep 30 01:15:36 2008) 提到:
☆─────────────────────────────────────☆
nde (nonlinear differential equation) 于 (Tue Sep 30 08:40:55 2008) 提到:
有个类似google doc系列的叫zoho,不知道有没有notebook.
☆─────────────────────────────────────☆
buddy |
|
E*V 发帖数: 17544 | 4 ☆─────────────────────────────────────☆
kukutf (五脚蟹★酷酷豆腐) 于 (Fri Oct 17 12:43:16 2008) 提到:
这几天,经常出现control和shift键突然不工作了,
今天早上又出现一次,搞得vi没法存盘。那个冒号w没法输入了。。
应该不是scim的问题,昨天scim已经被我全部清除了,
今天开始转debian lenny了,惹不起还躲不起么?
☆─────────────────────────────────────☆
nde (nonlinear differential equation) 于 (Fri Oct 17 13:00:49 2008) 提到:
你还是先换成windows看看是不是你键盘问题吧。
☆─────────────────────────────────────☆
jojomojo (koko 猴岛小英雄) 于 (Fri Oct 17 13:24:46 2008) 提到:
不要打击我啊。刚装了SCIM。
☆──────────────────────── |
|
n*****d 发帖数: 956 | 5 You may need to look inside the function. For example, if you have a number
of nested 'for', 'while' loops, it's bound to be slow. Change those into
matrix operations if you can.
Rewriting it in C is a good idea, if speed is an issue. I got a nonlinear
filter function running at least 20 times faster after rewritting it in C. |
|
b***y 发帖数: 2799 | 6 ☆─────────────────────────────────────☆
nde (nonlinear differential equation) 于 (Wed Jul 9 09:48:36 2008) 提到:
这里都讨论C++,Java哪个好,可是在我们学校里,基本上scientific computing都是
python了。最多是python + C extension。
个人认为python前途大好啊。
☆─────────────────────────────────────☆
leoyong (apple) 于 (Wed Jul 9 10:17:57 2008) 提到:
scientific computing 为啥不是matlab?
☆─────────────────────────────────────☆
faucetQ (fq) 于 (Wed Jul 9 10:22:51 2008) 提到:
coask,我们这儿搞计算的也都推倒matlab改用python了。有啥好处呢?
☆───────────────────── |
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m*********t 发帖数: 527 | 7 这帖子偏的。。前面就不说了。从 c++ physics engine 和 java 3d 游戏
performance 扯到赚不赚钱。
就事论事,physics engine 只是 3D 游戏的核心部分之一,一般来说都用 C/C++ 来写
。因为里面不管是粒子系统,软物体(有限元),流体,动力学,全都涉及到大量的矩
阵运算(而且一般还是 sparse 的)以及相关优化问题。这些矩阵运算不仅仅是做个加
法乘法的事情。比如 linear/nonlinear complementarity problem. 而且这种运算一般
都要求 real time。
在这上面你想要怎么 call opengl 渲染爱用啥用啥,js 也好 java 也好。。。然后大
型游戏你服务器那边底层构架 code 爱用啥用啥。。。
另外,ASM.js 其实本来就不是让人自己来读的。emscripten 编译出来的接近 llvm
byte code 一样。。还记得昨天 google 主页的 pony express 游戏吧,你可以看看那
段 js 代码,就是 emscripten 搞出来的。 |
|
H**r 发帖数: 10015 | 8 这是显然的,要么现在数学都要弄nonlinear模型,数学家从来没有否认过这一点。
如果去套到非线性是很多数学家头疼的问题 |
|
g****t 发帖数: 31659 | 9 I am still following the newest progress of nonlinear dynamics. |
|
L****8 发帖数: 3938 | 10 very useful if the objects have nonlinear deformation
such as heart in medical images |
|
t*h 发帖数: 148 | 11 以前的文献是写成
\bibitem[{Carroll \textit{et~al.}}(1995)]{Carroll95}
Carroll, R.J., D. Ruppert, and L.A. Stefanski, 1995. Measurement
Error in Nonlinear Models. New York: Chapman and Hall.
现在想用bibtex进行管理,有没有办法批量导入?
谢谢 |
|
w**********y 发帖数: 1691 | 12 I agree with casact.
As I know in my company, people make the judgment subjectively by their
market sense and whether the model fitting is meaningful and explainable. It
is similar when they do feature selection. They just try, try and try. Try
different categorizing, different models, linear or nonlinear, and finally
analyze based on the output tabulation and simply p-value.
They never use some advanced statistical methods. The way they utilize
smoothing methods (Spline, LOWESS..), Simulation ( |
|
s****1 发帖数: 425 | 13 要么全新,要么没有笔迹。有感兴趣的同学发信给我,可以提供详情。廉价
处理
Observational cosmology, stephen serjeant
0, Mathematical Methods for Physicists,物理学家用数学方法 Sixth Edition,
George B. Arfken (Author), Hans J. Weber (Author), Frank E. Harris (Author)
1,Atom Optics,原子光学 Pierre Meystre
2,Nonlinear optics, 非线性光学Robert W. Boyd
3,Elements of quantum optics,量子光学基础 Pierre Meystre and Murray Sargent
4,Spectra of Diatomic molecules (Molecular spectra and molecular structure)
Gerhard herzberg
5,Laser spectroscopy,激光光谱学 W. Demtroder
7,Qu... 阅读全帖 |
|
d*********e 发帖数: 3835 | 14 Direct Hire with full benefits. 3 different experience levels - multiple
openings.
Job duties for this position include: Investigate problems, analyze test
results, and generate solutions for basic problems associated with the
research, design, development, and manufacturing of Business Jets by
performing stability and control and flight dynamics analysis. Develop,
document, and inspect simulation models for the purposes of flight dynamics
analysis. Support engineering staff in establishing requ... 阅读全帖 |
|
p***8 发帖数: 36 | 15 PhD and post-doc positions in Mechanical Engineering are immediately
available in the research group of Dr. Yi Wang at the University of South
Carolina-USC (Columbia/Main campus, https://www.sc.edu/study/colleges_
schools/engineering_and_computing/faculty-staff/yi_wang.php). USC is the
flagship university in the State of South Carolina, and the Ph.D. program at
the department of Mechanical Engineering is ranked No. 31 nationally by the
National Research Council (NRC) [1], and the College of Engi... 阅读全帖 |
|
p***8 发帖数: 36 | 16 PhD positions in Mechanical Engineering are immediately available in the
research group of Dr. Yi Wang at the University of South Carolina-USC (
Columbia/Main campus, https://www.sc.edu/study/colleges_schools/engineering_
and_computing/faculty-staff/yi_wang.php). USC is the flagship university in
the State of South Carolina, and the Ph.D. program at the department of
Mechanical Engineering is ranked No. 31 nationally by the National Research
Council (NRC) [1], and the College of Engineering and ... 阅读全帖 |
|
z***a 发帖数: 6 | 17 感谢cnyy,demoner 的指正。关于math biology 的历史,我确实所知不多。我们不能
说过去几年开创了math biology 这个领域,只能说他焕发了青春。我想这么说更贴切
一些。
我想再补充一下,也顺便应云彩,司马不光大哥/老弟的要求,在这里献丑推荐些文章
。我想再强调一点的是,这个领域涉及面很广,很多化工,物理方面专家也做出了很大
的贡献(向我么中国人自豪的庄晓薇,sunny xie 都做出了很不错的成绩),如果有
谁的老板,同事被我漏掉了,请恕我疏漏。也欢迎大家来讨论补充。
现在的sysBio 大概能归为两类:一类是应用微分方程或者离散随机过程帮助研究比较
细节化的生物过程。细化到细胞内的某种分子的数量。一般大家只做某个通路,试验结
果也都小规模的。这方面我还是觉得John Tyson的工作最为系统和成功。他用微分方程
模型完整地解释细胞周期的机制。如果你能读懂Nonlinear dynamics and chaos 前面4
章,看他的文章应该就没问题了。这些成果是他近20年研究的集成,我么可以思考一下
如何在此基础上更进一步。同时,现在synthetic b |
|
z***a 发帖数: 6 | 18 感谢cnyy,demoner 的指正。关于math biology 的历史,我确实所知不多。我们不能
说过去几年开创了math biology 这个领域,只能说他焕发了青春。我想这么说更贴切
一些。
我想再补充一下,也顺便应云彩,司马不光大哥/老弟的要求,在这里献丑推荐些文章
。我想再强调一点的是,这个领域涉及面很广,很多化工,物理方面专家也做出了很大
的贡献(向我么中国人自豪的庄晓薇,sunny xie 都做出了很不错的成绩),如果有
谁的老板,同事被我漏掉了,请恕我疏漏。也欢迎大家来讨论补充。
现在的sysBio 大概能归为两类:一类是应用微分方程或者离散随机过程帮助研究比较
细节化的生物过程。细化到细胞内的某种分子的数量。一般大家只做某个通路,试验结
果也都小规模的。这方面我还是觉得John Tyson的工作最为系统和成功。他用微分方程
模型完整地解释细胞周期的机制。如果你能读懂Nonlinear dynamics and chaos 前面4
章,看他的文章应该就没问题了。这些成果是他近20年研究的集成,我么可以思考一下
如何在此基础上更进一步。同时,现在synthetic b... 阅读全帖 |
|
w***e 发帖数: 269 | 19 Use whichever one that looks pretty. But if you want to see linear or
nonlinear regression, use the scatter plot. It also depends on the labeling
of your x-axis. If it is numerical, use scatter plot (or bar graph). If it
is not numerical, like A,B,C,D or control, drug a, drug b, use bar graph. |
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m********7 发帖数: 75 | 20 The HHMI Janelia farm research campus is searching for one post doc or
research scientist in biomedical imaging technology. The position will
support the investigation and development of novel imaging technologies that
enable high resolution molecular imaging (fluorescence, Raman, nonlinear
light matter interaction) in light scattering media (such as deep tissues).
The position requires Ph.D. in physics, chemistry, optical engineering or
other closely related field. Experimental skills in optica |
|
d*****r 发帖数: 2583 | 21 the reason linear models are still useful is:
1. some system were built at the beginning to be linear system, there're
a lot of examples in engineering systems, like simple electronic
circuits, or mechanical systems, etc. So of course you use linear
system to study it.
2. some systems are too complicated and nonlinear, we don't have a good
math to study these systems, so we use linear systems to approximate it.
Unfortunately, most of this approximation is purely academic; the
predictions are ... 阅读全帖 |
|
|
S*M 发帖数: 10832 | 23 对这个领域有兴趣
看了版上人推荐的Nonlinear dynamics and chaos,觉得挺有收获
不知道还有没有其他可推荐的
比如control theory或者统计方面的书? |
|
a********k 发帖数: 2273 | 24 花了一个小时,深深的鄙视一下自己的无聊行径!!
125 蔡亮 男 1980年11月 复旦大学 生命
科学 2007年12月毕业于[美国]北卡大学 [美国]加州大学旧金山分校 博士后
Cai L, Mostov K. Polarity is destiny. Cell. 2009 Nov 13;139(4):660-2. PubMed
PMID: 19914162; PubMed Central PMCID: PMC2900917.
Cai L, Makhov AM, Schafer DA, Bear JE. Coronin 1B antagonizes cortactin and
remodels Arp2/3-containing actin branches in lamellipodia. Cell. 2008 Sep
5;134(5):828-42. PubMed PMID: 18775315; PubMed Central PMCID: PMC2570342.
Cai L, Makhov AM, Bear JE. F-actin... 阅读全帖 |
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B*****e 发帖数: 1005 | 25 140后的几个也不是美国AP啊,文章比跟前几个有距离
140 黄亿华 男 1971年10月 中国科学院生物物理研究所 生命
科学 2004年02月毕业于[美国]康奈尔大学 [美国]休斯医学研究所/西南医学中
心 讲师
1: Huang Y, Smith BS, Chen LX, Baxter RH, Deisenhofer J. Insights into pilus
assembly and secretion from the structure and functional characterization of
usher PapC. Proc Natl Acad Sci U S A. 2009 May 5;106(18):7403-7. Epub 2009
Apr
20. PubMed PMID: 19380723; PubMed Central PMCID: PMC2670885.
2: Lin SC, Huang Y, Lo YC, Lu M, Wu H. Crystal structure of the BIR1 doma... 阅读全帖 |
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N******n 发帖数: 3003 | 26 Biological pathway selection through nonlinear dimension reduction
2011, 12(3): 429
tx |
|
t*d 发帖数: 1290 | 27 http://www.genomeweb.com//node/980559?hq_e=el&hq_m=1103092&hq_l
----------------------------------------
A recent study by scientists at Yale University suggests that the actual
cost of sequencing may be much higher than some current estimates indicate
since those figures may not factor in the analysis costs that are necessary
for a successful sequencing project.
In the paper, published in Genome Biology last month, Yale's Mark Gerstein
and colleagues consider costs that weren’t taken into accou... 阅读全帖 |
|
l**********1 发帖数: 5204 | 28 一会儿 MS program 一会尔批者地 再下一问是 将来当天牛呢 吧?
给你指条路吧
找他当PhD thesis main advisor:
last author of Science paper (2011)
//www.ncbi.nlm.nih.gov/pubmed/21310963
********************
Irving R. Epstein
Principal Investigator
Professor of Chemistry and Volen National Center for Complex Systems
Ph.D., Harvard University
Nonlinear Chemical Dynamics
---------------------------
//hopf.chem.brandeis.edu/members.html
将来天牛Professor 的可能性比那个啥SIT 的没有以下的CNS papers 记录的lab 高多啦
//hopf.chem.brandeis.edu/publ.html |
|
l**********1 发帖数: 5204 | 29 Math/Systems/Synthetic Biology 人物榜
French
Jean Clairambault PhD
Directeur de recherche à l'INRIA
HTTPS//www.rocq.inria.fr/bang/JC/JCarticles.html
he 不搞生物吗?
one paper (2009):
Modelling physiological and pharmacological control on cell proliferation to optimise cancer treatments.
Mathematical Modelling of Natural Phenomena, 4(3):12-
link:
HTTPS//www.rocq.inria.fr/bang/JC/JC4MMNP2009.pdf
more his papers:
HTTPS//www.rocq.inria.fr/bang/JC/Jean_Clairambault.html
his leading project:
巴黎-Rocquencourt 研究... 阅读全帖 |
|
l**********1 发帖数: 5204 | 30 Continue:
Cell cycle/Budding new mechanisms cutting edge approaching:
//adsabs.harvard.edu/abs/2010arXiv1011.2435B
Beersma, D. G. M.; Broer, H. W.; Efstathiou, K.; Gargar, K. A.; Hoveijn, I.
Pacer cell response to periodic Zeitgebers (2011)
Physica D: Nonlinear Phenomena, Volume 240, Issue 19, p. 1516-
cited:
>(5) asymmetry in the observed period
and the phase delay and phase advance components of phase
response curves. Aside from these, we also now have a set
of four directly observable paramet... 阅读全帖 |
|
l**********1 发帖数: 5204 | 31 Continue:
Cell cycle/Budding new mechanisms cutting edge approaching:
//adsabs.harvard.edu/abs/2010arXiv1011.2435B
Beersma, D. G. M.; Broer, H. W.; Efstathiou, K.; Gargar, K. A.; Hoveijn, I.
Pacer cell response to periodic Zeitgebers (2011)
Physica D: Nonlinear Phenomena, Volume 240, Issue 19, p. 1516-
cited:
>(5) asymmetry in the observed period
and the phase delay and phase advance components of phase
response curves. Aside from these, we also now have a set
of four directly observable paramet... 阅读全帖 |
|
v*****s 发帖数: 20290 | 32 time domain的overlap一般是用非线性的方法去找的。根据光的波长不同,可以使用不
同的Nonlinear powder或者crystal,然后找合频信号。
low coherence spectrometer是什么东西?没听说过啊。 |
|
v*****s 发帖数: 20290 | 33 time domain的overlap一般是用非线性的方法去找的。根据光的波长不同,可以使用不
同的Nonlinear powder或者crystal,然后找合频信号。
low coherence spectrometer是什么东西?没听说过啊。 |
|
l**********1 发帖数: 5204 | 34 antagonisctic co-evoultionary Replicators 吧
由 Kin selection Red Queen Dynamics 定输赢
one PhD thesis (2009) from Barcelona
by Cayuela JS
title:
Dynamics, Evolution and Inoformation in Nonlinear Dynamical Systems of
Replicators
PDF full text link:
//www.tesisenred.net/bitstream/handle/10803/7182/tjsc.pdf?sequence=1 |
|
c**a 发帖数: 94 | 35 这个图,如果做nonlinear fit的时候share both bottom and top, 就可以做出一个教
科书上讲PAM 和NAM的经典图,但是理论上能不能share both bottom and top 呢?
its |
|
l**********1 发帖数: 5204 | 36 以下的表格里的公式 楼主可以 选三个 写三个 用 Matlab 的 source code
看看用于解惑啥生物演化或社会经济变化的问题或现象 如何?
当然周末有空闲的话...
cited from
Dynamics, evolution and information in nonlinear dynamical systems of
replicators.
by Josep Sardanyés i Cayuela.
Universitat Pompeu Fabra (UPF), Barcelona PhD thesis (2009)
web link:
HTTP: //complex.upf.es/~josep/thesisJosepSardanyes.pdf |
|
c*****n 发帖数: 46 | 37 Carroll 的那本 measurement error in nonlinear models 就挺好。Fuller 那本有点
老了,而且我觉得讲的过于偏重方法本身了。 |
|
c*******0 发帖数: 190 | 38
In theory, there is no resolution limit for non-linear SIM…
Nonlinear structured-illumination microscopy: Wide-field fluorescence
imaging with theoretically unlimited resolution
http://www.pnas.org/content/102/37/13081.abstract |
|
|
发帖数: 1 | 40 "知道哪些问题重要哪些问题不重要,再这些重要的问题里,哪些问题是可以通过deep
learning解决的"
“bioinfo大量的精力其实浪费在寻找有效的feature上了”
我觉得这像一个哲学问题。
input: 血压数据 ------output:病人是否高血压
input: 血糖数据 ------output:病人是否糖尿病
input: 图像pixel ------output: 人脸识别这个是谁?
input: 遗传SNP ------output: 这个人会不会得帕金森?
对于任何新的问题/data,是不是我们都先blind的在training data上尝试各种
modeling?线性的非线性的;如果input和output真的有逻辑关系,那么至少会有一种
technique在test data上展现出很好的performance。
(当然参数的调试,甚至一开始选择哪种machine learning/deep learning手段这是另
外一个问题,可以另开个帖子)
如果尝试过很多,还是没能找到表现优异的model,
1. 是不是我们就认为input和output没... 阅读全帖 |
|
K****n 发帖数: 5970 | 41 面试了这么久,一个 offer 都没发出去,今天几个人开会,觉得还得广撒网。几个 FB
和 Google 过来的的 manager 认为 ML engineer 只有某些公司的某些组的才能用。
而我
我仍然认为生信生统这么牛逼,写code 这么随性,咱们肯定也有人!
希望理想中的你
PhD 念生统生信,且本科或者硕士有工程,数学,物理类的学位
发过ML相关文章
刷过 leetcode 或者写过 production code
可以站内联络我,我隔几天登陆会查邮箱,主要看缘分
如果没有工作经验,如果面试还行,package 算上股票我觉得可以给到 200-250k。也
说不定更多,因为最近 google 带头涨薪了。有别家 offer 的可以谈。面试面不好可
能等级就再低点。
update:
300k-400k level 的人其实是更缺的,只不过找不到人,我本来想降一点要求。
这几个 IC level 的面试流程反正差不多,如果同学们对高一个档次的职位有兴趣,当
然更欢迎简历。
教授也欢迎投简历,我们这边只有 EE, OR, bschool 的教授,目前还没有生统生信的
教授。教授待遇... 阅读全帖 |
|
K****n 发帖数: 5970 | 42 又开会了,我把信息更新一下到原帖
300k-400k level 的人其实是更缺的,只不过找不到人,我本来想降一点要求。
这几个 IC level 的面试流程反正差不多,如果同学们对高一个档次的职位有兴趣,当
然更欢迎简历。
教授也欢迎投简历,我们这边只有 EE, OR, bschool 的教授,目前还没有生统生信的
教授。教授待遇一般都是从 300-400k 这个档次往上的。
另外工作内容当然首先是 software engineer,然后需要做大量的 nonlinear
optimization 和 machine learning。在这个基础上如果分布式系统比较懂,code
quality 非常好,交流合作没问题,对产品能有好的理解,300k以上待遇是没问题的。
其实我觉得这都是基本要求,但是确实找不到人,非常欢迎背景符合的同学和老师报名
。 |
|
d********m 发帖数: 3662 | 43 从data出发不代表没有reasoning。我个人觉得攻克生物复杂性的应该定位于发展收集
数据的工具和发展数据分析的方法。你所谓的物理数学方法在复杂系统里的表现我一个
外行不能多加评判,但根据我当初选的nonlinear dynamics课的经验,应该不会太好。
一堆微分方程的paper,可行度有多少,也只有modeler自己心里清楚了。不过物理学家
想一步到位的心态可以理解。 |
|
v*******y 发帖数: 1586 | 44 optimization methods (linear, integer, nonlinear)
computer simulation
decision analysis
statistics
applied probability
artificial intelligence
This is from Kelly |
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a*****r 发帖数: 681 | 45 The very basic statistical modeling such as logistic regression, linear regression, nonlinear regression, time series, cross-correlation and so on. However, the statistics modeling skill usually cannot simply help you to land a job in marketing. lots of market analysis metrics such as price elaticity, market share measurement, market size estimation and so forth needed to be well established. |
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d***e 发帖数: 193 | 46 Thank you a lot for your answer:).Actually, I am planning to apply for a PhD
in Marketing, but it seems not feasible as a chemistry student without
strong marketing background. So I decided to get a master's degree in
Statistics firstly.
I will focus on the courses you listed out. Thank you again.
regression, nonlinear regression, time series, cross-correlation and so on.
However, the statistics modeling skill usually cannot simply help you to
land a job in marketing. lots of market analysis m |
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g****g 发帖数: 8 | 47 Position for
Ph.D graduate student for
• Optical super resolution nanoscopy,
• Micro/nanofluidics,
• Bioimaging
Highly motivated applicants with strong experimental background in optics
and bioimagings or micro/nanofluidics are invited to apply for Ph.D student
position for experimental research in Biomedical Engineering. We have
developed a large multifunctional far-field optical nanoscopic system using
two tunable femto lasers for the super resolution imaging,
nanop... 阅读全帖 |
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p***8 发帖数: 36 | 48 PhD and post-doc positions in Mechanical Engineering are immediately
available in the research group of Dr. Yi Wang at the University of South
Carolina-USC (Columbia/Main campus, https://www.sc.edu/study/colleges_
schools/engineering_and_computing/faculty-staff/yi_wang.php). USC is the
flagship university in the State of South Carolina, and the Ph.D. program at
the department of Mechanical Engineering is ranked No. 31 nationally by the
National Research Council (NRC) [1], and the College of Engi... 阅读全帖 |
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p***8 发帖数: 36 | 49 PhD positions in Mechanical Engineering are immediately available in the
research group of Dr. Yi Wang at the University of South Carolina-USC (
Columbia/Main campus, https://www.sc.edu/study/colleges_schools/engineering_
and_computing/faculty-staff/yi_wang.php). USC is the flagship university in
the State of South Carolina, and the Ph.D. program at the department of
Mechanical Engineering is ranked No. 31 nationally by the National Research
Council (NRC) [1], and the College of Engineering and ... 阅读全帖 |
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m********7 发帖数: 75 | 50 The HHMI Janelia farm research campus is searching for one post doc or
research scientist in biomedical imaging technology. The position will
support the investigation and development of novel imaging technologies that
enable high resolution molecular imaging (fluorescence, Raman, nonlinear
light matter interaction) in light scattering media (such as deep tissues).
The position requires Ph.D. in physics, chemistry, optical engineering or
other closely related field. Experimental skills in optica |
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